Department of Computer Science
 Rutgers University

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Rajat S Roy

Doctoral Student

Mailing address:
Department of Computer Science
Rutgers University
110 Frelinghuysen Road
Piscataway, NJ, 08854, USA

Visiting address:
Department of Computer Science
Rutgers University
Hill 270
110 Frelinghuysen Road
Piscataway, NJ, 08854, USA

Phone: 732-445-2001 ext. 9502
Fax:
E-mail: rajatroy@cs.rutgers.edu

Rajat Shuvro Roy comes from Bangladesh. He received his B.Sc. in Computer Science and Engineering from Bangladesh University of Engineering and Technology. Currently he is a PhD student at the Department of Computer Science, Rutgers University, New Brunswick, NJ. He is jointly supervised by Prof. Alexander Schliep and Prof. Debashish Bhattacharya, SEBS.

Upcoming/Recent presentations

Aug. 2, 2013. Comparison of eukaryotic single cell assembly tools. Contributed Talk at ICOP XIV - International Congress of Protistology. July 28 to August 2 2013, Vancouver, Canada.

Recent publications

D. Bhattacharya, R.S. Roy, D.C. Price and A. Schliep Studying the single life of eukaryotic microbes: Single cell genomics of marine plankton. Biochemist Magazine 2014, 36:1.

R.S. Roy, D. Bhattacharya and A. Schliep Turtle: Identifying frequent k-mers with cache-efficient algorithms. Bioinformatics 2014, 14:30, 1950–7.

R.S. Roy, D.C. Price, A. Schliep, G. Cai, A. Korobeynikov, E.C. Yang and D. Bhattacharya Single cell genome analysis of an uncultured heterotrophic stramenopile. Sci Rep 2014, 4:4780.

R.S. Roy Improving genome assembly by identifying reliable sequencing data. Ph.D. Thesis, Oct 2014.

R.S. Roy, D. Bhattacharya and A. Schliep Turtle: Identifying frequent k-mers with cache-efficient algorithms.. 2013. Arxiv.

Software lead

Turtle: Identifying frequent k-mers with cache-efficient algorithms.

SLiQ: Simple linear inequalities based Mate-Pair reads filtering and scaffolding.